Pinned Repositories
bash_utilities
ContaVect
Analyse DNA contaminants from NGS data
designer
sh-miR Designer is a software aimed for fast and efficient design of effective RNA interference (RNAi) reagents - sh-miRs, also known as artificial miRNAs.
fastq_control_sampler
Generates control fastq files R1 and R2 from fasta reference sequences
NTContent
PBRandomReads
Quade
Demultiplexer for PAIRED fastq files based on index sequence and PHRED quality (pure python)
Sekator
Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)
SSV-Conta
SSV-Conta quantify and characterize DNA contaminants from gene therapy vector sequenced by Illumina system.
SSV-Coverage
Coverage graph creator from BAM files (included in the SSV-Conta package)
emlec's Repositories
emlec/SSV-Conta
SSV-Conta quantify and characterize DNA contaminants from gene therapy vector sequenced by Illumina system.
emlec/ContaVect
Analyse DNA contaminants from NGS data
emlec/PBRandomReads
emlec/bash_utilities
emlec/designer
sh-miR Designer is a software aimed for fast and efficient design of effective RNA interference (RNAi) reagents - sh-miRs, also known as artificial miRNAs.
emlec/fastq_control_sampler
Generates control fastq files R1 and R2 from fasta reference sequences
emlec/NTContent
emlec/Quade
Demultiplexer for PAIRED fastq files based on index sequence and PHRED quality (pure python)
emlec/RefMasker
Hard mask homologies between fasta reference sequences identified by Blastn
emlec/Sekator
Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)
emlec/SSV-Coverage
Coverage graph creator from BAM files (included in the SSV-Conta package)
emlec/my_ipython_notebook
All ipython notebook
emlec/ncbi_search
Quick Tools
emlec/py
emlec/pyBlast
Simple and lightweight Python 2/3 wrapper module for NCBI BLAST+
emlec/pyDNA
Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation
emlec/pyFastq
Simple python 2.7 librarie to parse fastq files and handle illumina 1.8+ fastq sequences
emlec/Sam2SQL
emlec/samFields
Creation of histogram(s) representing the number of reads depending of MAPQ, AS, or NM SAM field.
emlec/utilities
emlec/VarDict
VarDict
emlec/VarDictJava
VarDict Java port