This repository contains the files both to
- reproduce all analysis in the article A joint Bayesian framework for missing data and measurement error using integrated nested Laplace approximations,
- generate the website https://emmaskarstein.github.io/Missing-data-and-measurement-error/.
The website is made using Quarto, and the compiled html-files can be found in the folder called docs. I recommend opening the file at docs/index.html to get started!
If you prefer looking directly at/running R-scripts, you can clone this repository and run the R-scripts in the folder called R. These R-scripts are automatically generated from the Quarto documents using knitr::purl.
- Figure 2: Run the file
simulation_study.qmd - Figure 3: Run the file
missing_covariate_imputation.qmd - Figure 4: Run the file
missing_and_mismeasured_covariate.qmd
See the respective data description files, docs/data_bloodpressure.html, docs/data_nhanes.html, docs/data_simulated.html.
R-INLA version ..........: 22.05.07
Date ....................: Sat May 7 12:43:31 PM +03 2022 (Version_22.05.07)
Maintainers .............: Havard Rue <hrue@r-inla.org>
: Finn Lindgren <finn.lindgren@gmail.com>
: Elias Teixeira Krainski <elias@r-inla.org>
Main web-page ...........: www.r-inla.org
Download-page ...........: inla.r-inla-download.org
Repository ..............: github.com/hrue/r-inla
Email support ...........: help@r-inla.org
: r-inla-discussion-group@googlegroups.com
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.2.1 (2022-06-23)
os macOS Big Sur ... 10.16
system x86_64, darwin17.0
ui X11
language (EN)
collate en_US.UTF-8
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tz Europe/Oslo
date 2023-09-01
pandoc 3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)
─ Packages ───────────────────────────────────────────────────────────────────
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class 7.3-20 2022-01-16 [1] CRAN (R 4.2.1)
classInt 0.4-9 2023-02-28 [1] CRAN (R 4.2.0)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.2.0)
codetools 0.2-18 2020-11-04 [1] CRAN (R 4.2.1)
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magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0)
MASS 7.3-57 2022-04-22 [1] CRAN (R 4.2.1)
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MatrixModels 0.5-1 2022-09-11 [1] CRAN (R 4.2.0)
mgcv 1.8-40 2022-03-29 [1] CRAN (R 4.2.1)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.0)
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patchwork 1.1.2 2022-08-19 [1] CRAN (R 4.2.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.0)
plyr 1.8.8 2022-11-11 [1] CRAN (R 4.2.0)
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R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0)
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Rcpp 1.0.11 2023-07-06 [1] CRAN (R 4.2.0)
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rlang 1.1.1 2023-04-28 [1] CRAN (R 4.2.0)
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scales 1.2.1 2022-08-20 [1] CRAN (R 4.2.0)
sf 1.0-14 2023-07-11 [1] CRAN (R 4.2.0)
sp * 2.0-0 2023-06-22 [1] CRAN (R 4.2.0)
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withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0)
wk 0.7.3 2023-05-06 [1] CRAN (R 4.2.0)
[1] /Library/Frameworks/R.framework/Versions/4.2/Resources/library
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