emmijokinen

Pinned Repositories

hruh_webpage
https://janihuuh.github.io/hruh_webpage/ Website for HRUH, hosted through GitHub
Language:HTML00
mgpfusion
mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that complements the available experimental data with large amounts of simulated data.
Language:Matlab15 1 04
TCRconv
TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
Language:Jupyter Notebook22 3 36
tcrconv_manu
Code related to TCRconv manuscript
Language:R00
TCRGP
TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.
Language:Jupyter Notebook26 2 35
tcrgp_manu_hcc
Analysis of HBV-specificites at the single-cell level in HCC-patients with TCRGP
Language:R00
hruh_webpage
https://janihuuh.github.io/hruh_webpage/ Website for HRUH, hosted through GitHub
Language:HTML0 1 06

emmijokinen's Repositories

emmijokinen/TCRGP
TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.
Language:Jupyter Notebook26 2 35
emmijokinen/TCRconv
TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
Language:Jupyter Notebook22 3 36
emmijokinen/mgpfusion
mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that complements the available experimental data with large amounts of simulated data.
Language:Matlab15 1 04
emmijokinen/hruh_webpage
https://janihuuh.github.io/hruh_webpage/ Website for HRUH, hosted through GitHub
Language:HTML00
emmijokinen/tcrconv_manu
Code related to TCRconv manuscript
Language:R00
emmijokinen/tcrgp_manu_hcc
Analysis of HBV-specificites at the single-cell level in HCC-patients with TCRGP
Language:R00