Covid19 App - Installation with Docker

Requirements

  • Clone this repo
  • You must install Docker and Docker-Compose

Run command to get the code Backend and Weights

chmod +x installer.sh
./installer.sh

Run command to run the application with Docker Compose

sudo docker-compose build
sudo docker-compose up

Visit the url to test app database results

http://localhost:1234 Databaseviewer

Usage

  • Check Docker Container

    • segmentation
  • Move the patient file to the /data/raw folder. App detect patient folder automatically and start preprocessing.

    • segmentation
  • The patient Dicom files converts to nifti format.(Dicoms is medical image storing format)

  • You can view the results of the prediction operation in "data/processed". There are two folders in "data/processed". "Original" folder contains raw images. Inside the "Result" folder there are segmented results.

    • segmentation