Pinned Repositories
3T
Tiered Tensor Transform (3T) multi-scale protein-ligand complex pocket structure generation & drug screening
6S083
Materials for MIT 6.S083 / 18.S190: Computational thinking with Julia + application to the COVID-19 pandemic
ADSM
A simulation of disease spread in livestock populations. Includes detection and containment simulation.
alignment_sandbox
Allows users to play with alignments and mess with the scoring matrix.
AlizaMS
DICOM Viewer
analyzing_github_popularity
Diving into Popularity of GitHub Repositories
ancestral
Material for Oliva et al.'s article on ancestral sequence reconstruction
annotated_deep_learning_paper_implementations
🧑🏫 50! Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
API
API for Current cases and more stuff about COVID-19 or the Novel Coronavirus Strain
Medical_AI_analysis
Our project provides AI tools for analyzing medical data
enformatik's Repositories
enformatik/alignment_sandbox
Allows users to play with alignments and mess with the scoring matrix.
enformatik/api-client-android
A sample Android app that calls the Google Genomics API.
enformatik/aspell-python
Python wrapper for aspell (C extension and python version)
enformatik/beam
RNA secondary structure motif discovery
enformatik/beeswarm-1
An R package implementing bee swarm plots
enformatik/biosql
enformatik/Central-Dogma
A simple web application for teaching students about transcription and translation of DNA into RNA into protein.
enformatik/copycat
Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtools to get coverage for each individual nucleotide in the genome using bedtools genomecov, then bins and organizes these coverage values into 10kb bins and outputs the coverage information in a .csv format (for upload to SplitThreader) and in a .seg format (for viewing the copy number profile in IGV)
enformatik/dmake
dmake - formerly used by openoffice.org
enformatik/Genomics-Bioinformatics-Rosalind-
problems list
enformatik/Glimmer-MG
Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering
enformatik/jnomics
Cloud Scale Genomic Analysis Framework for Hadoop
enformatik/lane-detection-using-hough-transform
Lane Detection Project, using Hough Transform
enformatik/lorenzmie
IDL code for analyzing in-line holographic microscopy images with the Lorenz-Mie theory of light scattering
enformatik/molvwr
WebGL molecule viewer made with Babylon.js
enformatik/parrot
Parrot Virtual Machine
enformatik/Quake
enformatik/Quorum
QUality Optimized Reads from the University of Maryland
enformatik/rakudobrew
Perl 6 installation manager
enformatik/rayleighsommerfeld
IDL code for analyzing in-line holographic microscopy images with Rayleigh-Sommerfeld back-propagation
enformatik/road_lane_line_detection
Find lane lines on the road using Python and OpenCV, applying Canny edge detectors and Hough line transforms
enformatik/Scimm
Sequence clustering with interpolated Markov models
enformatik/skdata
Data sets for machine learning in Python
enformatik/voila
Variational Inference for Langevin Equations
enformatik/XSim.cpp
simulate sequence data and complicated pedigree structures