/thunderstormMPI

Running ImageJ plugin ThunderSTORM on cluster using MPI

Primary LanguageC++

thunderstormMPI

Running ImageJ plugin ThunderSTORM on cluster using MPI as scheduler.

Getting start

  • Install imageJ https://github.com/fiji/fiji.git
  • Install thunderStorm cd Fiji.app/plugins wget https://github.com/zitmen/thunderstorm/releases/download/v1.3/Thunder_STORM.jar
  • Compile Requirement
    • C++ 17
  • Install thunderstormMPI git clone https://github.com/engine210/thunderstormMPI.git make

Ussage

Dynamic version

  • ./thunderstormMPI /input/data/directory/ /ouptpu/data/directory/
  • With slurm srun -N4 -n4 --exclusive ./thunderstormMPI /input/data/directory/ /ouptpu/data/directory/

Program Detail