enio23
Computational and Systems Biology, Modelling of signalling networks, Omics data and yadda yadda..
Heidelberg
Pinned Repositories
LINDA
Branch
carnival_bioc
carnival bioc development
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
CellNOptR-1
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
enio23.github.io
CARNIVAL
CAusal Reasoning for Network Identification with integer VALue programming in R
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
CNORode
add-on for CellNOptR using logic based differential equations
PHONEMeS-ILP
ILP implementation of PHONEMeS
enio23's Repositories
enio23/enio23.github.io
enio23/Branch
enio23/carnival_bioc
carnival bioc development
enio23/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
enio23/CellNOptR-1
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
enio23/CNORfeeder
CellNOptR add-on that permits to extend a network with links derived from literature
enio23/CNORode2017
modified version of CNORode including: steady state penalty, L1 regularisation, bootstrap, new transfer function
enio23/covid_ilp
Implementation of an ILP model for optimisation of the COVID-19 supply-chain network
enio23/CRC-pathway-biomarkers
Cell-type specific parameters of signalling pathway models as biomarkers for drug sensitivity
enio23/Gjerga_etal_PHONEMeS_Supplement
Supplemental materials for PHONEMeS Manuscript
enio23/Hong_etal_2020
Authentication of primary murine normal and pre-cancer hematopoietic progenitor cell lines by a microfluidics-based system
enio23/LINDA_ENCORE
Workflow of LINDA analyses over the ENCORE data
enio23/LINDA_Example
enio23/odeFeeder
enio23/PHONEMeS
PHONEMeS (PHOsphorylation NEtworks for Mass Spectrometry) is an R package to model signalling networks based on untargeted phosphoproteomics
enio23/ScreenProcessing
enio23/tacoma_image_dump
enio23/temptemptemp
temp repo for testing