Pinned Repositories
pIR
Estimation of isoelectric point of peptides and proteins using Support vector machines
awesome-nextflow
A curated list of nextflow based pipelines
bio-tools-setup
Util scripts to set up bioinformaic tools/packages.
compgen2021
ddiR
An R package to access to Omics Discovery Index API
dnm_chd
enriquea
Config files for my GitHub profile.
feseR
feseR: Combining feature selection methods for analyzing omics data
fsspark
Feature selection in Spark
wes_chd_ukbb
Meta-analysis of large-scale wes dataset using Hail
enriquea's Repositories
enriquea/feseR
feseR: Combining feature selection methods for analyzing omics data
enriquea/wes_chd_ukbb
Meta-analysis of large-scale wes dataset using Hail
enriquea/awesome-nextflow
A curated list of nextflow based pipelines
enriquea/bio-tools-setup
Util scripts to set up bioinformaic tools/packages.
enriquea/compgen2021
enriquea/dnm_chd
enriquea/enriquea
Config files for my GitHub profile.
enriquea/exomeQC-hail-gnomad
Code repository for sample and variant qc for Sanger cohorts using hail and gnomad qc code.
enriquea/fsspark
Feature selection in Spark
enriquea/gene_lists
List of gene lists for genomic analyses.
enriquea/gnomad_hail
Hail helper functions for gnomAD/MacArthur lab
enriquea/hail
Scalable genomic data analysis.
enriquea/hitzlab
enriquea/ibaqpy
Absolute quantification package based on MSsstats output and Quantms
enriquea/learningPySpark
Code base for the Learning PySpark book (in preparation)
enriquea/multiomics-configs
Set of config files for species, taxonomies, etc
enriquea/pgatk
PGATK: ProteoGenomics Analysis ToolKit
enriquea/pgdb
ProteomeGenomics Database Creation - Nextflow Pipeline
enriquea/pquantR
R package for protemics downstream a analysis
enriquea/proteomics-metadata-standard
The Proteomics Experimental Design file format: Standard for experimental design annotation
enriquea/py-pgatk
Python tools for proteogenomics analysis toolkit
enriquea/pyvatk
Variant Annotator ToolKit
enriquea/RareComb
R package to perform combinatorial analysis of rare variants
enriquea/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
enriquea/scRNA-seq
enriquea/sequence-features
enriquea/spark
Apache Spark - A unified analytics engine for large-scale data processing
enriquea/wes_hail
enriquea/wes_skat
Nextflow workflow to run SKAT
enriquea/ZebraQ
Introduction to R and bulk-RNAseq data analysis using DESeq2