Working with Dorado Basecaller
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ethan-mcq commented
Does this tool only work with the Guppy basecaller? I used the Dorado basecaller like so:
@PG ID:basecaller PN:dorado VN:0.1.1+eb48766 CL:dorado basecaller dorado-0.1.1/dna_r10.4.1_e8.2_400bps_hac@v4.0.0 fast5s --modified-bases 5mCG_5hmCG
I can't seem to get it to work, although the test data works just fine. Thanks for the help in advance!
cjw85 commented
The program will work with any BAM file containing aligned reads and MM and ML tags.