epi2me-labs/wf-alignment

Wrong description of sample sheet CSV

Closed this issue · 1 comments

Hi,

It seems the description of the sample sheet CSV file is wrong. It says to contain three columns:
CSV file with columns named barcode, sample_name and type. Permissible if passing a directory containing barcodeXX sub-directories.
but this gives an error:
OSError: Could not parse sample sheet, it must contain two columns named 'barcode' and 'sample_id' or 'alias'.

Thanks for pointing this out, I will amend this in the upcoming release.