epi2me-labs/wf-alignment

Issues

• Not able to run the programme

  #34 opened 4 months ago by mariasolruiz
  1

• Issue with containers - .command.sh: line 2: python: command not found

  #33 opened 4 months ago by Erin-Chee
  3

• Local run of wf-alignment

  #32 opened 5 months ago by mdillon3
  3

• obtaining the workflow fails

  #31 opened 6 months ago by rguden
  2

• Varient calling pipline

  #30 opened 7 months ago by exhgphan
  4

• Step addMedakaToVersionsFile failing in google cloud batch gcb

  #29 opened 7 months ago by mcouch-lg
  0

• EPI2ME running error

  #23 opened 7 months ago by lshi238
  2

• Question about Map long cDNA reads

  #25 opened 7 months ago by YIGUIz
  1

• Min Depth Column

  #28 opened 8 months ago by Goraichuk
  3

• Pipeline fails on non-NFS filesystems

  #27 opened 8 months ago by TBradley27
  5

• Amplicon workflow for a mixed sample

  #26 opened 9 months ago by mgils4
  2

• Running Nextflow Workflow on Compute Node Without Internet Accessng to the internet

  #24 opened 9 months ago by YIGUIz
  7

• Question about alignment ubam file

  #22 opened a year ago by u1200538
  1

• add @RG on Minimap2

  #21 opened a year ago by Yoon90
  3

• Attribute Error when making report

  #19 opened a year ago by crip1163
  5

• subschemas error

  #20 opened a year ago by kostasgalexiou
  1

• Error in glue

  #18 opened a year ago by mlpereira87
  7

• Not able to run wf-alignment on google cloud or aws batch

  #17 opened a year ago by YussAb
  1

• I have a single fastq as input, the workflow is trying to cat a fastq.gz file

  #16 opened a year ago by yinshiyi
  4

• [Bug]: wf-alignment does not allow input of reference sequence in Epi2Me Labs Windows Client v4.0.0

  #10 opened a year ago by onkeld
  4

• [Sugestion]:

  #15 opened a year ago by mlpereira87
  1

• Process `pipeline:plotStats (1)` terminated with an error exit status (1)

  #8 opened a year ago by matteo1313
  25

• Workflow terminates with command exit status 127.

  #14 opened a year ago by HealHound
  5

• [not a bug] fastq inputs for wf_alignment

  #11 opened a year ago by neurogenetics1
  2

• [Bug]: Interest of barcoder tool in the pipeline

  #9 opened a year ago by abdeljalil-senhaji
  1

• [Bug]: Unknown parameters

  #13 opened a year ago by matteo1313
  2

• Error: mv: cannot stat 'mapula.json': No such file or directory

  #7 opened a year ago by stefandiederich
  3

• [troubleshooting]:

  #12 opened a year ago by zigeuner
  2

• Sporadic 141 exit status in pipeline:getVersions

  #3 opened 2 years ago by waltergallegog
  3

• With some datasets the fastcatUncompress process seems unnecessary and time consuming

  #5 opened 2 years ago by waltergallegog
  3

• Variable all not saved

  #6 opened 3 years ago by giusmar
  2

• Wrong description of sample sheet CSV

  #2 opened 3 years ago by ulbivin
  1

• Cannot get property 'lenght' on null object

  #1 opened 3 years ago by Stakaitis
  3