Issues
- 1
--sample alias not reflected in output file names
#58 opened by hackkr - 1
- 3
Question about Creating Haplotype-Specific Hi-C Links and Methylation Levels
#52 opened by jjuhyunkim - 3
Duplicate results in bam?
#48 opened by gotouerina - 1
wf-pore-c-demo results confirmation
#56 opened by xinrjiang - 3
- 3
Could I choose output?
#50 opened by gotouerina - 2
- 1
- 21
POREC:merge_namesorted_bams (1) terminated with an error exit status (1) -- Execution is retried (1)
#37 opened by Oksanak22 - 11
- 8
- 2
How to get percentage of Pore-C DNA?
#47 opened by jameson-orvis - 7
- 7
.command.sh: line 2: 33 Killed minimap2 -x map-ont -d "reference.fasta.mmi" "reference.fasta"
#42 opened by socialhang - 8
How to deal with too many pair files?
#46 opened by gotouerina - 7
What scaffolder to use with .hic file?
#36 opened by SwenDiepstraten - 18
- 4
- 9
Process 'POREC:digest_align_annotate (1)' terminated with an error exit status (1)
#39 opened by malszycki - 34
- 3
How can I identify the LSF executor ?
#28 opened by Nuturetree - 1
java seems to get to little memory and crashes
#44 opened by ahcm - 2
- 4
why .hic file in juice box have lots of black line
#40 opened by markme123 - 2
.command.sh: line 2: 33 Killed minimap2 -x map-ont -d "reference.fasta.mmi" "reference.fasta"
#41 opened by socialhang - 2
- 6
Error executing process > 'POREC:makeReport (1)'
#18 opened by hgingras - 6
Question on interpreting output bam file
#31 opened by sanalbert - 5
- 3
HiC file from Wf-pore-C
#32 opened by Oksanak22 - 5
How the data is filtered in Pore-C
#29 opened by Oksanak22 - 1
Process `POREC:merge_pairs (1)` terminated with an error exit status (1)
#33 opened by SwenDiepstraten - 7
Resulting BAM file not working with SALSA?
#27 opened by sanalbert - 9
pairsToCooler
#25 opened by Oksanak22 - 24
[Question]: How to export to juicer (.hic)
#15 opened by malszycki - 4
- 14
- 2
- 2
[Question:] Does Pore-C pipeline support data from MNase/DNase-digested genome?
#21 opened by divinomas - 5
[Bug]: concatemer info
#13 opened by will-NYGC - 5
- 12
[Bug?]: [W::bgzf_read_block] EOF marker is absent. The input may be truncated
#12 opened by malszycki - 1
- 1
pairsToCooler
#24 opened by Oksanak22 - 5
[Bug]: nextflow pipeline running failed
#10 opened by ChenDepp - 3
- 4
- 3
- 2
[Bug]: fastcat: command not found
#11 opened by MichelMoser