Error executing process > 'pipeline:process_bams:tag_bams (14)
Closed this issue · 5 comments
Operating System
Other Linux (please specify below)
Other Linux
Linux 4.18.0-372.32.1.el8_6.x86_64
Workflow Version
v.1.01
Workflow Execution
Command line
EPI2ME Version
No response
CLI command run
nextflow run epi2me-labs/wf-single-cell
-profile singularity
-c wf.config
-params-file nextflow.params.yaml
-resume
wf.config.txt
sRunWorkflow.sh.txt
nextflow.params.yaml.txt
Workflow Execution - CLI Execution Profile
custom
What happened?
test.wf.32271319.out.txt
test.wf.32271319.err.txt
nextflow.log.txt
Here are the relevant out files.
Relevant log output
Log outputs are in files above.
Application activity log entry
Used cluster.
Were you able to successfully run the latest version of the workflow with the demo data?
yes
Other demo data information
None.
Hi @Jason-Eigenbrood I believe this is a bug that is fixed in v1.0.3. Could you please try this version using
nextflow run epi2me-labs/wf-single-cell -r v1.0.3'
Thanks
Hi Jason,
You can give-resume
a try but I'm unsure at which stage the workflow will resume at.
Hi Neil,
-resume did not work but once I restarted the workflow everything ran great until pipeline:process_bams:stringtie, which got stuck at 95%. I see same issue on another thread so I will also comment there!
Hi @Jason-Eigenbrood thanks for the update. I will close this ticket then