Pinned Repositories
CRAG
De novo characterization of cell-free DNA fragmentation hotspots
cragr
R package for CRAG
epifluidlab.github.io
finaledb_portal
finaledb_workflow
FinaleMe
FinaleToolkit
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
FRAGMA
A recreation of the FRAGmentomics-based Methylation Analysis (FRAGMA) from Zhou et al. 2022
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
wf-pore-c
epifluidlab's Repositories
epifluidlab/FinaleToolkit
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
epifluidlab/cragr
R package for CRAG
epifluidlab/FinaleMe
epifluidlab/CRAG
De novo characterization of cell-free DNA fragmentation hotspots
epifluidlab/finaledb_workflow
epifluidlab/finaledb_portal
epifluidlab/epifluidlab.github.io
epifluidlab/FRAGMA
A recreation of the FRAGmentomics-based Methylation Analysis (FRAGMA) from Zhou et al. 2022
epifluidlab/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
epifluidlab/wf-pore-c
epifluidlab/bedr
:exclamation: This is a read-only mirror of the CRAN R package repository. bedr — Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
epifluidlab/bedtorch
Fast and native toolsuite for BED file manipulation
epifluidlab/DoGFinder
epifluidlab/finaletoolkit-docs
epifluidlab/hictools
Simple home-made tools for Hi-C analysis
epifluidlab/juicer4snakemake
Juicer pipeline re-implemented with Snakemake
epifluidlab/MAGNIFIER
epifluidlab/pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
epifluidlab/Rhtslib12
HTSlib high-throughput sequencing library as an R package