eporetsky
ORISE Postdoc at USDA GrainGenes in Albany, CA. Working on improving protein function predictions in small grains using protein structures
San Diego
Pinned Repositories
anc2vec
Method for constructing embeddings of GO terms.
assocplots
bioinformatics-repo
MutRank
PanPPI
parallel_rTASSEL
Parallelized rTASSEL GLM and MLM using GNU parallel
PhosBoost
PlantDiffusion
syntenyZ
Custom scripts to make comparative genomic plots using genoPlotR
workflows
eporetsky's Repositories
eporetsky/MutRank
eporetsky/bioinformatics-repo
eporetsky/PhosBoost
eporetsky/syntenyZ
Custom scripts to make comparative genomic plots using genoPlotR
eporetsky/PanPPI
eporetsky/parallel_rTASSEL
Parallelized rTASSEL GLM and MLM using GNU parallel
eporetsky/anc2vec
Method for constructing embeddings of GO terms.
eporetsky/assocplots
eporetsky/biopython
Official git repository for Biopython (originally converted from CVS)
eporetsky/biopython.github.io
Source of biopython.org website, migrated from MediaWiki
eporetsky/blasTree
eporetsky/PlantDiffusion
eporetsky/SQNce
eporetsky/workflows
eporetsky/ChatMTA
Using Large Language Model (LLM) for extraction and biocuration of genetic mapping data from manuscripts.
eporetsky/eporetsky.github.io
eporetsky/FAC_manuscript
eporetsky/FASSO
FASSO: Functional Annotations using Sequence and Structure Orthology
eporetsky/goPredSim
eporetsky/MD_protein_ligand
Simple protein-ligand complex simulation with OpenMM
eporetsky/rust-gwas
eporetsky/scikit-multilearn
A scikit-learn based module for multi-label et. al. classification
eporetsky/sgkit
Statistical genetics toolkit
eporetsky/SimPLI
eporetsky/TEA-GCN
Two-Tier Ensemble Aggregation Gene Co-expression Network (TEA-GCN): Capturing tissue/condition-specific co-expression from large transcriptomic datasets