/PopGenGuides

Guides I wrote for labmates

Guides

Human Population and Evolutionary Genomics Lab | LANGEBIO

About

This is a collection of guides for various tasks in bioinformatics for Population Genomics with no accompanying scripts nor files.

Index

General

  • pongGuide: How to prepare data for pong and plot the results.
  • TreeMix: How to use TreeMix.

Data Format Conversions

  • beagle3xVCF: How to convert Beagle3 files to VCF and re-phase them.
  • VCF2PLINK: How to convert VCF to useable PLINK filesets.