Pinned Repositories
AdvancedInformatics2021
Course materials for 2021
AdvancedInformatics_RMarkdown_Week2
R markdown work for Advanced Informatics Winter 2021
AdvancedInformatics_RMarkdown_Week3
R markdown exercise for week 3
AdvancedInformatics_Week4
Week 4 snakemake exercise
AdvancedInformatics_Week4_Snakemake
Week 4 snakemake exercises
c2c12_trackhub
enc4_mouse
Scripts to import ENCODE processed data for snRNA-seq experiments and snATAC-seq experiments to Seurat and ArchR objects, respectively.
enc4_mouse_paper
Code for the ENCODE4 single-nucleus mouse analysis.
mirna_pipeline
Code for processing microRNA-seq data from fastq
WGCNA
Consensus WGCNA and post-analysis between Downs syndrome microarray data in from GSE59630, Alzheimer's RNA seq data from Mayo Clinic, and Alzheimer's microarray data from Zhang lab.
erebboah's Repositories
erebboah/enc4_mouse
Scripts to import ENCODE processed data for snRNA-seq experiments and snATAC-seq experiments to Seurat and ArchR objects, respectively.
erebboah/enc4_mouse_paper
Code for the ENCODE4 single-nucleus mouse analysis.
erebboah/c2c12_trackhub
erebboah/mirna_pipeline
Code for processing microRNA-seq data from fastq
erebboah/WGCNA
Consensus WGCNA and post-analysis between Downs syndrome microarray data in from GSE59630, Alzheimer's RNA seq data from Mayo Clinic, and Alzheimer's microarray data from Zhang lab.
erebboah/AdvancedInformatics2021
Course materials for 2021
erebboah/AdvancedInformatics_RMarkdown_Week2
R markdown work for Advanced Informatics Winter 2021
erebboah/AdvancedInformatics_RMarkdown_Week3
R markdown exercise for week 3
erebboah/AdvancedInformatics_Week4
Week 4 snakemake exercise
erebboah/AdvancedInformatics_Week4_Snakemake
Week 4 snakemake exercises
erebboah/AdvancedInformatics_Week5_Plotting
Week 5 plotting in R and Python.
erebboah/AdvancedInformatics_Week6-10_Pipelines
Week 6-10 with Dr. Long, running pipelines for DNA-seq, ATAC-seq, and RNA-seq.
erebboah/AdvancedInformaticsExercises
erebboah/bulk_atac_pipeline
Pipeline adapted from Klebea Carvalho and Dr. Rabi Murad from the Mortazavi lab, for remote server w/ SLURM scheduler.
erebboah/ee282
erebboah/lab_pipelines
Pipelines for analyzing data for different protocols in the Mortazavi lab