Pinned Repositories
ai-toolbox
angelman
RDRF based software for the Global Angelman Registry
Jupyter_scRNASeq
Single cell gene expression analysis
mnd
MND is a patient registry based on TRRF (https://github.com/eresearchqut/trrf).
monocle
QUT eResearch Monorepo
ontvisc
ONT-based viral screening in plants
terraform-example-foundation
Example repo showing how the CFT modules can be composed to build a secure cloud foundation.
transcription
QUT eResearch Transcription API
trrf
The Trial Ready Registry Framework (or TRRF) has been forked from RDRF to produce a trial ready framework.
VirReport
eResearch Queensland University of Technology's Repositories
eresearchqut/Jupyter_functional_annotation
Annotate a set of gene IDs to KEGG pathways and GO terms. Plot the results.
eresearchqut/hpc-benchmark
eresearchqut/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
eresearchqut/data-science-kiosk
Data Science Kiosk Proof of Concept
eresearchqut/Jupyter_WES
eresearchqut/Jupyter_Nextflow_install
Installing Nextflow
eresearchqut/Jupyter_scRNASeq
Single cell gene expression analysis
eresearchqut/Jupyter_eDNA
Analysis of environmental DNA data
eresearchqut/bucket-antivirus-function
Serverless antivirus for cloud storage.
eresearchqut/cdap-docs
Documentation for CDAP Final Report
eresearchqut/VirReportImage
Docker Image for VirReport Pipeline
eresearchqut/jupyter_nbgitpuller_test
Test repo for distributing Jupyter Notebooks
eresearchqut/asap
eresearchqut/dotes
eresearchqut/etc_jupyterlab_telemetry_extension
eresearchqut/deepvariant
Deepvariant Nextflow Pipeline
eresearchqut/ontprocessing
Basic Nextflow pipeline for processing ONT samples
eresearchqut/nano-q
Nano-Q Container Image
eresearchqut/modbam2bed
modbam2bed container image
eresearchqut/video-host
Video hosting for multiple projects & origins using AWS Elemental MediaConvert, CloudFront, and Lambda
eresearchqut/terraform-example-foundation
Example repo showing how the CFT modules can be composed to build a secure cloud foundation.
eresearchqut/bonito
A docker image for the Oxford Nanopore Technologies Bonito software
eresearchqut/xnat-build
XNAT-WEB Container
eresearchqut/monocle
QUT eResearch Monorepo
eresearchqut/serverless-search
A proof-of-concept serverless full-text search solution built with Apache Lucene and Quarkus framework.
eresearchqut/clevar
eresearchqut/anacapa-image
A Docker Image with tools for the Anacapa Pipeline
eresearchqut/django-useraudit
Django user audit utilities like logging user log in, disabling access when password expires or user is inactive.
eresearchqut/fazeleh_jupyter
eresearchqut/aws-ses-wp-mail
An AWS SES wp_mail() drop-in