Python CLI tool for streamlining Hydrus simulations
- Python 2.7.x
- http://numpy.org
- http://pandas.pydata.org
The python runner enters the root fraction and climate data into the hydrus
program based on csv files beta.csv and atmosph.csv. An example hydrus
workspace (with the correct soil profile/time/parmeter info) is needed for the
code to replicate for each sequential simulation. The simulation names are must
be entered one per line and saved in the simulation_names.dat file. The time
points for each simulation is saved one per line in simulations.dat.
The file will run the soil profile with 101 nodes which it populates in the
nodes section of the profile.dat file.
See testdata/input for an example configuration.
The inputs for python runner are as follows:
-n(name)-ifile path for input-sfile path for simulations-ofile path for output--chain-theta
When runner.py is used the code will generate the first simulation file and
ask the user to run the hydrus file from a separate command prompt and hit enter
upon a complete run of the hydrus file. Upon hitting enter, the last time
point’s theta value for the previous simulation will be read in as an initial
value for the next simulation. This will be repeated for the number of
simulations in the simulation files.
process_workspace.py will pull out h, theta, and ET for all
files. The inputs needed are:
- Path to directory containing Hydrus output
- Path to directory where processed data will be stored.
- Raise an issue, or...
- Contact Heather Kropp (Postdoctoral Researcher, Department of Geography, Colgate University):
- 315.228.7027
- hkropp@colgate.edu
Unit tests can be found in tests.py.