Pinned Repositories
bayesian-analysis-recipes
A collection of Bayesian data analysis recipes using PyMC3
bayesian-deep-learning-demystified
In which I try to demystify the fundamental concepts behind Bayesian deep learning.
bayesian-stats-modelling-tutorial
How to do Bayesian statistical modelling using numpy and PyMC3
dl-workshop
Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!
essays-on-data-science
In which I put together my thoughts on the practice of data science.
llamabot
Pythonic class-based interface to LLMs
Network-Analysis-Made-Simple
An introduction to network analysis and applied graph theory using Python and NetworkX
nxviz
Visualization Package for NetworkX
pyjanitor
Clean APIs for data cleaning. Python implementation of R package Janitor
ericmjl's Repositories
ericmjl/iacs2017
Materials for IACS 2017 contest.
ericmjl/bibles
Machine-readable versions of popular English translations of the Bible
ericmjl/czbiohub
ericmjl/matplotlib-tutorial
A short tutorial on how to make matplotlib plots.
ericmjl/target-prediction
In which I try to replicate the main findings of Ferrero, E., Dunham, I., & Sanseau, P. (2017), Journal of Translational Medicine, 15(1), 182.
ericmjl/insight-data-challenges
ericmjl/bayesian-measurement-paper
My academic 'rant' on why n=3 is not sufficient.
ericmjl/protein-systematic-characterization
All our protocols, data, analysis, and papers related to this project are stored here.
ericmjl/autoencoders
Me playing around with autoencoders. For fun.
ericmjl/boston-gov-data
ericmjl/cookiecutter-talk
A repository to bootstrap my writing using Markdown, Pandoc, HTML and Reveal.js
ericmjl/genomic-surveillance-whitepaper
Publicly written white paper on genomic surveillance.
ericmjl/pymc3-models
Default models built on top of PyMC3.
ericmjl/ssh-copy-id-for-OSX
Quick Mac OSX port of the useful unix utility ssh-copy-id
ericmjl/arduino
My arduino sketches.
ericmjl/big-data-boston-2016
Slides for my talk at the Big Data Boston Meetup 2016 12 December 2016
ericmjl/chainer-cupy-test
A repo in which I play around with CuPy and Chainer.
ericmjl/dc_2016_04
Data Carpentry materials for Jackson Labs workshop
ericmjl/genotype-phenotype-talk
Research talk on R21 proposal.
ericmjl/HA-Segment-Classification
ericmjl/holoviews-test
Just me testing out holoviews.
ericmjl/home-temperature-logger
ericmjl/jubilant-goggles
ericmjl/minimal-dask-examples
A set of minimal Dask examples to teach myself how to use Dask.
ericmjl/pyprot
PyProt makes working with protein files very convenient. It supports popular protein structure file formats such as PDB and MOL2.
ericmjl/pyro-testing
Testing out Pyro.
ericmjl/python-command-line
How to make a Python module or package accessible via command line.
ericmjl/python-scriptures
python-scriptures is a Python package and regular expression library for validating, extracting, and normalizing biblical scripture references from blocks of text.
ericmjl/swe-barebones
ericmjl/uncovering-earths-virome
My journal club presentation for 5 December 2016