Pinned Repositories
BIBSnet
container_walkthrough
discovery_imaging_utils
Imaging utilities for the Discovery Program at the University of Minnesota. Utilities assist with the analysis of resting-state fMRI data (primarily through fMRIPREP), along with other miscellaneous utilities for FreeSurfer and general imaging analysis.
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
HBCD_CBRAIN_PROCESSING
hbcd_qmri_postproc
HBCD_Raw_Anat_QC_Container
hbcd_symri_relaxometry_workflow
Scripts that manage grabbing dicom archives containing QALAS images, converting them to relaxometry maps as BIDS derivatives, and reuploading to S3
hcp_workbench_docker
Repository for building hcp_workbench as a docker container.
imaging_visualizations
erikglee's Repositories
erikglee/HBCD_Raw_Anat_QC_Container
erikglee/BIBSnet
erikglee/container_walkthrough
erikglee/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
erikglee/HBCD_CBRAIN_PROCESSING
erikglee/hbcd_qmri_postproc
erikglee/hbcd_symri_relaxometry_workflow
Scripts that manage grabbing dicom archives containing QALAS images, converting them to relaxometry maps as BIDS derivatives, and reuploading to S3
erikglee/hcp_workbench_docker
Repository for building hcp_workbench as a docker container.
erikglee/imaging_visualizations
erikglee/misc_fmri_analysis_utils
Miscellaneous utils for analyzing resting-state fMRI data (primarily post-processing)
erikglee/discovery_imaging_utils
Imaging utilities for the Discovery Program at the University of Minnesota. Utilities assist with the analysis of resting-state fMRI data (primarily through fMRIPREP), along with other miscellaneous utilities for FreeSurfer and general imaging analysis.
erikglee/erikglee.github.io
erikglee/hbcd_deidentification_routines
erikglee/hbcd_motion_postproc_testing
erikglee/imaging_python_env
erikglee/mancorr-postbibsnet
basic utility to perform functions of postbibsnet processing for manually corrected segmentations
erikglee/nibabies_age_float
fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI
erikglee/NORDIC_Raw
Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
erikglee/remove_non_brain_clusters
erikglee/test_container