erikrikarddaniel

I work with protein evolution and microbial ecology. Nowadays using mostly R/tidyverse, I have a long history in computing involving several tools.

Linnaeus University & Stockholm UniversityStockholm

Pinned Repositories

biomakefiles
Library makefiles for various bioinformatic tools.
Language:R2 2 137
eemisdada2
Packaging of dada2
Language:R0 1 121
environmentmicrobedb
A Ruby on Rails application for microbial diversity data from natural environments
Language:Ruby1 1 62
gff2tsv
R script that converts gff files to tsv, splitting the attribute field into separate fields.
Language:R1 1 00
gtdb-trees
Language:R1 1 00
hmmrank
Calculates a ranking of hmm profiles per sequence
Language:R0 1 50
magmap
Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
Language:Nextflow1 1 231
pfitmap-db
Database construction tools for pfitmap-shiny
Language:R0 1 371
pfitmap-nextflow
Nextflow pipeline for hierarchical protein classification
Language:Nextflow0 1 240
taxdata2taxflat
Converts an NCBI taxonomy dump ("taxdata") to a flat tsv file with columns for recognized ranks.
Language:Ruby0 2 30

erikrikarddaniel's Repositories

erikrikarddaniel/pfitmap
Language:Ruby1 1 1170
erikrikarddaniel/environmentmicrobedb-tools
Language:Ruby
erikrikarddaniel/p-evol
My protein evolution tools
Language:Ruby1 0
erikrikarddaniel/sll-amplicontools
Workflow files and scsripts for amplicon analyses.
Language:Ruby0 3
erikrikarddaniel/sll-phylogenomics
Language:Ruby0 0