Pinned Repositories
5g-cmetab-tpm-viz
visualizations for central metabolism genes in 5GB1c
5g-python-intro
Intro repository for learning python with 5G rna-seq data
5G-rnaseq-sandbox
Starter repo for getting familiar with M. buryatense 5GB1 RNA-seq data
data-explorations
miscellaneous explorations in data viz
deep-5g-sandbox
Sandbox for exploring deep learning tools with 5G RNA-seq data
dna-pytorch-tutorial
a super basic tutorial on how to create a pytorch models for raw DNA sequences
limited-ch4-tpm-analysis
Visualization of M. buryatense RNA-seq data in CH4 limited conditions
mbur-sequence-learning
mistborn
Analysis of eyebrow interactions between characters in Mistborn by Brandon Sanderson
promoter-id-from-rnaseq
Computational framework to identify promoter sequences from RNA-seq datasets
erinhwilson's Repositories
erinhwilson/dna-pytorch-tutorial
a super basic tutorial on how to create a pytorch models for raw DNA sequences
erinhwilson/promoter-id-from-rnaseq
Computational framework to identify promoter sequences from RNA-seq datasets
erinhwilson/mistborn
Analysis of eyebrow interactions between characters in Mistborn by Brandon Sanderson
erinhwilson/mbur-sequence-learning
erinhwilson/5g-cmetab-tpm-viz
visualizations for central metabolism genes in 5GB1c
erinhwilson/5g-python-intro
Intro repository for learning python with 5G rna-seq data
erinhwilson/5G-rnaseq-sandbox
Starter repo for getting familiar with M. buryatense 5GB1 RNA-seq data
erinhwilson/data-explorations
miscellaneous explorations in data viz
erinhwilson/deep-5g-sandbox
Sandbox for exploring deep learning tools with 5G RNA-seq data
erinhwilson/limited-ch4-tpm-analysis
Visualization of M. buryatense RNA-seq data in CH4 limited conditions
erinhwilson/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
erinhwilson/entropy
demo from CSE583
erinhwilson/evolution
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
erinhwilson/explore-5G-expression
erinhwilson/homework_grading_scripts
Simple scripts to automate a bit of the homework grading process for instructors and TA's.
erinhwilson/hyak-sandbox
sandbox for learning UW hyak
erinhwilson/interactive-thesis
A compilation of interactive visualizations made throughout my PhD work
erinhwilson/mnm-taste-test
Data analysis of a very scientific study investigating the perceived taste differences of American and European M&Ms.
erinhwilson/modulome-workflow
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
erinhwilson/modulytics-5g
Visualization website for the modulome, a cross-species modularization of bacterial transcriptomes - adapted for 5G data (M. buryatense)
erinhwilson/personal-webpage
erinhwilson/planets
erinhwilson/pymodulon
Python package for analyzing and visualizing iModulons
erinhwilson/regulatory-dna-perplexity
Investigating perplexity in microbe regulatory sequences using NLP language modeling techniques
erinhwilson/ViewMotif
A python script to visualize DNA sequence motifs within your promoter sequences. Generates a HTML file as an output. Allows you to view overlapping DNA motifs