OAEI Evaluation Scripts

Support scripts for the OAEI evaluation: largebio and phenotype tracks

Dependencies

The source codes depend on LogMap. Please clone LogMap's project and execute mvn clean install to add LogMap's dependency to the maven repository.

Ian Harrow, Ernesto Jimenez-Ruiz, Andrea Splendiani, Martin Romacker, Peter Woollard, Scott Markel, Yasmin Alam-Faruque, Martin Koch, James Malone, and Arild Waaler. Matching Disease and Phenotype Ontologies in the Ontology Alignment Evaluation Initiative. Journal of Biomedical Semantics, 2018. [pdf] [pdf@Springer] [paper@JBS]
Ian Harrow, Rama Balakrishnan, Ernesto Jimenez-Ruiz, Simon Jupp, Jane Lomax, Jane Reed, Martin Romacker, Christian Senger, Andrea Splendiani, Jabe Wilson, Peter Woollard. Ontology mapping for semantically enabled applications. Drug Discovery Today, 2019. [paper@drudis]