/trio

Primary LanguageR

Trio-GCTA

This repository contains simulated data and code for fitting the model described in ref.

The data consists of 1000 simulated parent-offspring trios. It is arranged so that the first 1000 individuals are mothers, the next 1000 are fathers and the last 1000 are children. Within each group, the data is sorted according to trios. For example, individual 1, 1001 and 2001 is the mother, father and offspring of one trio. The data is stored in typical plink format with .fam, .bed and .bim files.

The file trio.R uses OpenMx to fit the model in R.