Pinned Repositories
trio_binning
Programs implementing the trio-binning genome assembly method
PBJelly
a fork of the gap-closing pipeline PBJelly
hic-pipeline
A pipeline for scaffolding a genome assembly using Hi-C
piggia
Controlling a Gaggia with a Raspberry Pi
astyanax-genome-paper
Scripts and workflows used in Warren et al. (2021)
ArrowGrid
basic-assembly-stats
bedops
BEDOPS: high-performance genomic feature operations
bio-handy
Some handy scripts for comp bio and sequence analysis
bioconda-recipes
Conda recipes for the bioconda channel.
esrice's Repositories
esrice/cyvcf2
cython + htslib == fast VCF and BCF processing
esrice/esrice.github.io
esrice/trio_binning
Programs implementing the trio-binning genome assembly method
esrice/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
esrice/hic-pipeline
A pipeline for scaffolding a genome assembly using Hi-C
esrice/slurm
Cookiecutter for snakemake slurm profile
esrice/pav
Phased assembly variant caller
esrice/astyanax-genome-paper
Scripts and workflows used in Warren et al. (2021)
esrice/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
esrice/test-datasets
Test data to be used for automated testing with the nf-core pipelines
esrice/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
esrice/misc-tools
Miscellaneous bioinformatics scripts and tools
esrice/basic-assembly-stats
esrice/piggia
Controlling a Gaggia with a Raspberry Pi
esrice/workflows
esrice/plant-monitor
esrice/rustbuilder
docker container for building cross-compatible static binaries
esrice/cactus
Official home of genome aligner based upon notion of Cactus graphs
esrice/slurm-genotyping
Genotyping with snakemake on SLURM
esrice/dotfiles
esrice/Comparative-Annotation-Toolkit
esrice/ArrowGrid
esrice/PBJelly
a fork of the gap-closing pipeline PBJelly
esrice/bioconda-recipes
Conda recipes for the bioconda channel.
esrice/MashMap
A fast approximate aligner for long DNA sequences
esrice/trio-binning
scripts for trio binning
esrice/canu
A single molecule sequence assembler for genomes large and small.
esrice/bio-handy
Some handy scripts for comp bio and sequence analysis
esrice/chicago
esrice/ucscthesis
LaTeX templates for UCSC thesis and/or advancement (thesis proposal)