BRIGAD3 is a Python API and Vue application wrapping a D3.js arch visualization to generate interactive images of bacterial genome assemblies and annotations. It connects to np-core/np-assembly and np-core/np-type pipelines for state-of-the-art genome assembly and pathogen typing of nanopore sequence reads from completed and online sequence runs.
Pre-print available on BioRxiv.
conda install -c conda-forge -c bioconda -c esteinig brigad3