esteinig/nanoq

Issues

• Nanoq on multiple compressed fastq.gz files

  #46 opened 7 months ago by RommerskirchenA
  3

• quality report vs length report

  #45 opened 8 months ago by Hedi65
  1

• Read quality thresholds (Q)

  #44 opened a year ago by Hedi65
  1

• total input read report

  #43 opened a year ago by esteinig
  0

• stdout compression auto detection

  #42 opened a year ago by esteinig
  0

• Allow empty file flag

  #40 opened a year ago by esteinig
  0

• Using nanoq for PacBio reads

  #41 opened a year ago by krausfeldtle
  3

• Ambiguous base filter

  #39 opened a year ago by esteinig
  2

• Implement head/tail read trimming

  #36 opened 2 years ago by esteinig
  0

• Refactor `u32` to `usize`

  #37 opened 2 years ago by esteinig
  0

• Optional length / quality outputs per read

  #33 opened 2 years ago by esteinig
  0

• Add filtered read count to JSON output summary

  #34 opened 2 years ago by esteinig
  0

• Compression inference from file extension for writing to STDOUT

  #35 opened 2 years ago by esteinig
  1

• JSON output format

  #30 opened 3 years ago by esteinig
  0

• Send summary stats to stdout

  #31 opened 3 years ago by mbhall88
  9

• Option for second read file (Illumina)

  #28 opened 3 years ago by esteinig
  1

• Basic summary statistics

  #3 opened 3 years ago by esteinig
  5

• Better tests for filters

  #26 opened 3 years ago by esteinig
  1

• Mean read qualities

  #27 opened 3 years ago by esteinig
  0

• Max quality filter

  #25 opened 3 years ago by esteinig
  1

• [JOSS Review] Differences from filtlong

  #20 opened 3 years ago by bovee
  4

• [JOSS Review] Paper comment

  #17 opened 3 years ago by natir
  16

• Longest and shortest reads switcheroo

  #24 opened 3 years ago by esteinig
  0

• [JOSS Review] Other comments

  #19 opened 3 years ago by natir
  4

• [JOSS Review] Code quality comment

  #18 opened 3 years ago by natir
  2

• BioConda release

  #13 opened 3 years ago by esteinig
  2

• Distributions

  #9 opened 5 years ago by esteinig
  11

• Tests

  #6 opened 4 years ago by esteinig
  1

• Add read N50 to summary

  #10 opened 4 years ago by esteinig
  1

• Implement auN

  #12 opened 5 years ago by esteinig
  1

• `u64` for base count

  #23 opened 3 years ago by esteinig
  0

• Fixed upper thresholds

  #15 opened 3 years ago by esteinig
  1

• Unified fastx_reader for crab-cast function

  #14 opened 3 years ago by esteinig
  1

• Adopt rust-bio functions to rust-bio-tools

  #16 opened 3 years ago by esteinig
  1

• FASTA statistics is not handled properly

  #21 opened 3 years ago by cgjosephlee
  3

• Conda upload

  #11 opened 5 years ago by esteinig
  1

• stdin / stdout

  #7 opened 5 years ago by esteinig
  8

• Summary stats on filtered

  #8 opened 5 years ago by esteinig
  1

• Speed of average quality computation

  #2 opened 5 years ago by esteinig
  0

• Implement proper writing with bio::

  #5 opened 5 years ago by esteinig
  5

• Buffer size limit in IO

  #1 opened 5 years ago by esteinig
  1

• Output logic

  #4 opened 5 years ago by esteinig
  0