Poremongo

Overview

Interface for nanopore signal read management in MongoDB.

Install

With MongoDB:

conda install -c bioconda poremongo

From PyPI without MongoDB:

pip install poremongo

Example: Command Line Interface

Placeholder

Example: Python API

Placeholder

Publications

We will publish this program as an application note, but intend to keep track of changes and features in upcoming versions through an ongoing manuscript on BioRxiv. Until publication, please cite the BioRxiv version if you use Poremongo.

Authors:

Eike Steinig
Michael Hall
Lachlan Coin
Emma McBryde

Release notes: v0.4-beta

Current version is the feature-incomplete alpha release v0.3a. In the feature-complete beta release v0.4b the following additional features will be included:

Vue interface for navigating database collections
Database analysis pipelines in Nextflow