ethanbass
PhD candidate studying plant interactions & their chemical mechanisms in the @Kessler-Lab. I also do some scientific software development in R.
Cornell University
Pinned Repositories
amfinder-apple-silicon
The Automatic Mycorrhiza Finder (AMFinder) allows for automatic computer vision-based identification and quantification of AM fungal colonisation and intraradical hyphal structures on ink-stained root images using convolutional neural networks.
chromatographR
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
chromConverter
Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)
chromConverterExtraTests
Extra test files for chromConverter package
covr
Test coverage reports for R
ggtukey
Easily add compact letter display (i.e. "tukey letters") to ggplot figures
mzinspectr
Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.
ShinyChromViewer
Shiny gadget for interactively viewing 3D chromatograms
VPdtw
Variable Penalty Dynamic Time Warping
zerenebatchR
Utility for batch processing images in Zerene Stacker
ethanbass's Repositories
ethanbass/chromConverter
Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)
ethanbass/chromatographR
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
ethanbass/ggtukey
Easily add compact letter display (i.e. "tukey letters") to ggplot figures
ethanbass/mzinspectr
Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.
ethanbass/ShinyChromViewer
Shiny gadget for interactively viewing 3D chromatograms
ethanbass/VPdtw
Variable Penalty Dynamic Time Warping
ethanbass/amfinder-apple-silicon
The Automatic Mycorrhiza Finder (AMFinder) allows for automatic computer vision-based identification and quantification of AM fungal colonisation and intraradical hyphal structures on ink-stained root images using convolutional neural networks.
ethanbass/chromConverterExtraTests
Extra test files for chromConverter package
ethanbass/covr
Test coverage reports for R
ethanbass/drat
Sample drat repository for easy forking and bootstrapping
ethanbass/entab
* -> TSV
ethanbass/ethanbass
Config files for my GitHub profile.
ethanbass/ethanbass.github.io
ethanbass/ethanbass.r-universe.dev
R universe
ethanbass/export_auto
Macro and instructions to export raw data from chemstation as CSV files.
ethanbass/GCalignR
Simple peak alignment for gas-chromatography data in R
ethanbass/metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
ethanbass/metaMS
data processing for MS-based metabolomics
ethanbass/mspcompiler
Compile Mass Spectral Libraries from Various Sources
ethanbass/PCAtest
R package PCAtest for evaluating the statistical significance of PCA analysis, selecting number of significant PC axes, and testing the contributions of the variables to those PCs.
ethanbass/platereadr
Package for analysis plate reader data.
ethanbass/ptw
Parametric Time Warping
ethanbass/pyham
ethanbass/RaMS
R-based access to Mass-Spectrometry data
ethanbass/regress
Gaussian Linear Models with Linear Covariance Structure
ethanbass/skyrms
A Python library for the analysis of signaling games
ethanbass/zerenebatchR
Utility for batch processing images in Zerene Stacker
ethanbass/lavaanExtra
Convenience Functions for Package `lavaan`