/malawi_offline

Code for Malawi course that will work offline.

Primary LanguageR

Material for running Malawi short course material offline.

In this repo there is code to recreate the analysis from the MLW/ICL hosted introduction to infectious disease modelling course with a focus on malaria.

There are three documented R scripts that can be adapted along with odin model files.

  1. compile_plot.R: Compiles and plots all outputs from an odin model.
  2. sensitivity.R: Runs a simple sensitivity analysis and plots one specified output variable over time for multiple specified input variables.
  3. sensitivity_malaria.R: Runs a more complicated sensitivty analysis where the output at time t_max is plotted for one specified out for multiple input variables.