Issues
- 2
Organisms will not utilize substrates
#183 opened by wtscott31 - 7
Rtools for standard BacArena
#176 opened by maringos - 5
rmSubs(arena, mediac) doesn't work
#190 opened by joyvgeerestein - 1
- 1
Cell lysis
#168 opened by zhssakura - 1
Fatal error: cannot create 'R_TempDir' Error in makePSOCKcluster(names = spec, ...) : Cluster setup failed. 2 of 2 workers failed to connect. Calls: simEnv ... diffuse_par -> diffuse_par -> <Anonymous> -> makePSOCKcluster Timing stopped at: 0.004 0.082 240.4 Execution halted
#188 opened by arijitnus - 0
- 1
Problems with code reproduction in tutorials
#186 opened by lishijia13579 - 0
modify sihumi_test community
#185 opened by mmpust - 1
Simulations taking too long
#184 opened by EoinV - 1
- 3
More individuals than space on the grid error
#181 opened by wtscott31 - 2
Metabolite diffusion
#179 opened by zhssakura - 1
Manipulate reaction equations?
#180 opened by hannahschrenk - 7
Model grows without any carbon source
#178 opened by Zhelunnn - 4
- 4
Is this line of findFeeding3rep correct?
#173 opened by maringos - 5
Install Dependencies
#153 opened by maringos - 0
Auxotrophic example in Introduction doc
#175 opened by spburillo - 3
Continue simulation at time step n
#174 opened by charlos1204 - 1
FVA Min-Max mix up in FluxVarSim()
#172 opened by shraddhakhirwadkar - 0
Set tstep (the time (in h) per iteration) with different values does not change the simulation results.
#171 opened by XuejianXiong - 3
modeling of external enzymes
#165 opened by jotech - 0
Parallelization issue
#170 opened by hites77 - 0
Comparison of 'deathrate' and 'removeM'
#169 opened by zhssakura - 0
Parameter justification for bacarena
#167 opened by hites77 - 6
Can't add my own model readMATmod
#166 opened by JessicaSingh1997 - 14
simEnv_par() function
#161 opened by XuejianXiong - 1
- 0
Warnings after running some functions
#163 opened by maringos - 3
Explanation of warnings
#151 opened by maringos - 0
Need for species selection in findRxnFlux
#162 opened by maringos - 2
Do entries of lobnd have names?
#159 opened by maringos - 0
Need of cutoff in findfeeding3rep function
#160 opened by maringos - 2
Removed from CRAN
#158 opened by Jsakkos - 3
Set or control pH
#157 opened by utkinaira - 6
SybilSBML fail to install
#156 opened by aassie - 5
Installing BacArena on Windows 10
#155 opened by mTangherlini - 0
findFeeding3 function
#154 opened by charlos1204 - 2
Parallelization and hidden GLPK
#152 opened by maringos - 2
Antibiotics
#150 opened by tenguzame - 3
Seeking advice for modeling eukaryotic cells
#149 opened by utkinaira - 7
Unable to import .mat model
#146 opened by yugi1001 - 2
Cross-feeding plot customization
#145 opened by tenguzame - 0
Bug in Continue functionality
#148 opened by maringos - 2
Duplication of organism - addOrg issue
#147 opened by maringos - 2
Minor typo found
#144 opened by maringos - 2
Programming and BacArena
#140 opened by maringos - 5
Setting environmental concentrations in simulations
#142 opened by ziels - 2
fluxVarSim and rnd argument
#141 opened by maringos