evo-design/evo

Issues

• Finetuning on a sequenceClassification task

  #34 opened 8 months ago by leannmlindsey
  7

• When I wanted to specify the evo-1-8k-base model for tokenizer, Evo kept using evo-1-131k-base instead

  #89 opened 25 days ago by CrazyHsu
  1

• NameError: name 'swap_mha_rope' is not defined"

  #91 opened 9 days ago by JinwnK
  0

• GPU error with DataParallel

  #86 opened 2 months ago by UsmanMahmood8
  2

• PEFT Prompt Tuning: forward() got an unexpected keyword argument 'inputs_embeds'

  #62 opened 6 months ago by mikeleske
  1

• How to directly fine tune the instances created by StripedHyena instead of the classes encapsulated by Hugging Face

  #90 opened 25 days ago by qijishinidie
  0

• frameworks for FSDP and model/pipeline parallelism

  #85 opened 2 months ago by adrienchaton
  14

• Fine-tune evo to achieve a sequence-level prediction

  #44 opened 8 months ago by jingliezhou
  1

• Release of the data

  #88 opened 2 months ago by ReaganGen
  0

• How can I use multiple graphics cards to fine tune this model

  #59 opened 6 months ago by qijishinidie
  2

• Clarification on Fine-Tuning with Special Tokens (e.g., <cas9>) in Evo Model

  #83 opened 2 months ago by MarcAmil30
  1

• hello_evo.ipynb code error

  #52 opened 2 months ago by yyyyyuzj
  1

• why inference with kv cache have problems?

  #82 opened 2 months ago by objectnoppppppp
  0

• AssertionError: rotary_emb is not installed

  #23 opened 3 months ago by bioone
  5

• Pretrain

  #80 opened 4 months ago by multydoffer
  0

• ModuleNotFoundError: No module named 'transformers_modules.togethercomputer.evo-1-131k-base.9562f3fdc38f09b92594864c5e98264f1bfbca33.tokenizer'

  #53 opened 7 months ago by adrienchaton
  8

• Release of Pre-training Data Preprocess Scripts

  #41 opened 8 months ago by KatarinaYuan
  1

• Estimate Required RAM for inference

  #76 opened 5 months ago by fmaa23
  0

• RNA sequence

  #43 opened 5 months ago by TiantianZhu110
  2

• Prompt for virus and plasmid generation

  #37 opened 5 months ago by apcamargo
  1

• Max Seq length for inference

  #24 opened 5 months ago by JunboShen
  5

• OSError: togethercomputer/evo-1-131k-base does not appear to have a file named pytorch_model.bin, tf_model.h5, model.ckpt or flax_model.msgpack.

  #39 opened 5 months ago by jingliezhou
  2

• Is it posisble for us to access the embeddings layer?

  #47 opened 5 months ago by HelloWorldLTY
  2

• gene essentiality

  #49 opened 5 months ago by JunboShen
  1

• Scoring DNA with lineages

  #51 opened 5 months ago by hmms117
  1

• Limiting attention radius and extracting embeddings

  #58 opened 5 months ago by george-henderson
  1

• Scoring Question

  #63 opened 5 months ago by MarcAmil30
  1

• Require for GWAS(genome wide association studies)

  #64 opened 5 months ago by 1633347510
  1

• more prompt scheme documentation?

  #65 opened 5 months ago by pan-genome
  1

• issue on model.to("cuda") with device_map="auto"

  #61 opened 6 months ago by UmutAlihan
  1

• Memory usage?

  #60 opened 6 months ago by bio-rat
  1

• AttributeError: 'InferenceParams' object has no attribute 'fused_ft_kernel'

  #57 opened 6 months ago by qijishinidie
  1

• 131k base seems to output non-DNA characters

  #56 opened 6 months ago by cosmicBboy
  4

• TORCH_HOME not used when downloading models

  #48 opened 7 months ago by james-vincent
  2

• T4 GPUs support? Any recommendation

  #50 opened 7 months ago by ggkngktrk
  1

• Extracting EVO representations rather than logits

  #32 opened 8 months ago by amoskalev
  5

• Default pretrained_model_path is personal directory

  #46 opened 8 months ago by leannmlindsey
  0

• What was the train/val data split you used during pretraining?

  #45 opened 8 months ago by ricomnl
  0

• GPU memory usage

  #35 opened 8 months ago by WangLabTHU
  1

• Questions about the performance of evo

  #40 opened 8 months ago by HelloWorldLTY
  1

• Err

  #42 opened 8 months ago by leilichun
  1

• Training code availability?

  #27 opened 8 months ago by chaitjo
  2

• Inquiry Regarding Local Model Usage and Importing Model Files

  #22 opened 8 months ago by yyly6
  2

• How can I use this tool to solve the practical biological problem of predicting transcription factor target sequences in actual biology?

  #16 opened 8 months ago by lizhebio
  3

• Mamba training loss at 7B parameters

  #15 opened 8 months ago by manuel-tran
  2

• Dose someone have idea about issues such as "'MHA' is not defined"?

  #36 opened 8 months ago by xmz111
  1

• OpenGenome Dataset

  #33 opened 8 months ago by leannmlindsey
  1

• Release of OpenGenome

  #28 opened 8 months ago by KatarinaYuan
  2

• Running the model in a firewalled environment

  #26 opened 8 months ago by ernestmordret
  3

• Demo application with Artificial?

  #18 opened 9 months ago by artificial-paul
  0