Pinned Repositories
amr
For AMRFinderPlus experimentation, not guaranteed to work or be consistent with releasess
amrfindertest
Test for AMRFinderPlus
asm-ngs-workshop
ASM NGS Workshop
bioconda-recipes
Conda recipes for the bioconda channel.
home
Used when setting up new VMs or new users on completely new systems. Basically minimum I feel like I need to get any work done.
ncbiminute2303
Resources for NCBI Minute
stxtyper
STX operon typing
workshop-asm-ngs-2022
Run some tests
amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
stxtyper
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
evolarjun's Repositories
evolarjun/stxtyper
STX operon typing
evolarjun/amr
For AMRFinderPlus experimentation, not guaranteed to work or be consistent with releasess
evolarjun/workshop-asm-ngs-2022
Run some tests
evolarjun/amrfindertest
Test for AMRFinderPlus
evolarjun/asm-ngs-workshop
ASM NGS Workshop
evolarjun/bioconda-recipes
Conda recipes for the bioconda channel.
evolarjun/home
Used when setting up new VMs or new users on completely new systems. Basically minimum I feel like I need to get any work done.
evolarjun/ncbiminute2303
Resources for NCBI Minute
evolarjun/pages-test
Test GitHub pages
evolarjun/scripts
A few little scripts to keep around
evolarjun/SeqSero2
SeqSero2
evolarjun/workshop
evolarjun/workshop-asm-ngs-2024
Pre-conference workshop for ASM NGS 2024