evolgenomics

Pinned Repositories

Archive
Archival code from previous projects
0 0 00
cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C00
FaroeQTL
QTL mapping experiment between the Faroese mouse from Mykines island (MYK) and SM/J
Language:R0 1 01
haplotagging
Code and binaries related to processing haplotagging data
Language:C++13 2 13
HeliconiusHaplotagging
Code related to Meier, Salazar, Kucka et al.
Language:Mathematica8 4 04
HybridMiX
Code associated with our HybridMiX paper
Language:R0 0 00
Longshanks
Data and analyses related to Castro et al., 2019, doi: 10.1101/378711
Language:Mathematica02
physlr
:chains: Construct a Physical Map from Linked Reads
Language:Python0 0 00
popHap_simulations
Run simulations for population haplotyping
Language:Perl00
SamHaplotag
Process haplotag barcodes in SAM format
Language:C++00

evolgenomics's Repositories

evolgenomics/haplotagging
Code and binaries related to processing haplotagging data
Language:C++13 2 13
evolgenomics/HeliconiusHaplotagging
Code related to Meier, Salazar, Kucka et al.
Language:Mathematica8 4 04
evolgenomics/Archive
Archival code from previous projects
0 0 00
evolgenomics/cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C00
evolgenomics/FaroeQTL
QTL mapping experiment between the Faroese mouse from Mykines island (MYK) and SM/J
Language:R0 1 01
evolgenomics/HybridMiX
Code associated with our HybridMiX paper
Language:R0 0 00
evolgenomics/Longshanks
Data and analyses related to Castro et al., 2019, doi: 10.1101/378711
Language:Mathematica02
evolgenomics/physlr
:chains: Construct a Physical Map from Linked Reads
Language:Python0 0 00
evolgenomics/popHap_simulations
Run simulations for population haplotyping
Language:Perl00
evolgenomics/SamHaplotag
Process haplotag barcodes in SAM format
Language:C++00
evolgenomics/scaffhtag
Pipeline for scaffolding genome assemblies using haplotagging reads
evolgenomics/shrinkwrapping
Amira Tcl and other utility scripts for segmenting objects and generating surfaces
Language:Haxe
evolgenomics/supernova
10x Genomics Linked-Read Diploid De Novo Assembler