peptide finder
A fast quality control tool and peptide finder for FASTQ files written in rust inspired by fastQC. Results are written to summary.html as a self containing html report with visualizations for all statistics.
Available statistics are:
- Read length
- Sequence quality score
- Sequence quality per base
- Sequence content per base
- GC content
Installation
There are multiple ways to install peptide finder:
Source
Download the source code and within the root directory of source run
cargo install
Usage
pf -q path/to/my_sequence.fastq
Arguments:
| Parameter | Default | Description |
|---|---|---|
| -q --fastq | - | The path to the FASTQ file to use |