evotools

Tools to support the study of genome and epigenome evolution and their relevance to disease.

Edinburgh, United Kingdom

Pinned Repositories

CattleGraphGenomePaper
Set of script for the paper on the cattle graph genome
Language:Shell13 1 11
CattleOManalyses
Script and some results from the Optical mapping SV analyses
Language:Shell1 1 00
GCRF_tutorial
Material for the bioinformatics tutorial held in Tanzania in May 2022
Language:HTML0 1 00
hapbin
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
Language:C++41 7 3917
hapbinX
Pairwise version of hapbin (https://github.com/evotools/hapbin) for studying the strength of selection on multi-allelic haplotypes
Language:C++0 3 01
mm-iHS
Scripts for calculating mm-iHS
Language:Perl00
nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
Language:Nextflow51 3 2110
nf-VarAnno
A cross-species variant annotation pipeline based on Nextflow
Language:Nextflow00
nSPECTRa
Nextflow workflow to compute the mutation spectra
Language:Nextflow2 1 00
wBuffaloVsCow
Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"
Language:R2 2 02

evotools/nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
Language:Nextflow51 3 2110
evotools/hapbin
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
Language:C++41 7 3917
evotools/CattleGraphGenomePaper
Set of script for the paper on the cattle graph genome
Language:Shell13 1 11
evotools/nSPECTRa
Nextflow workflow to compute the mutation spectra
Language:Nextflow2 1 00
evotools/wBuffaloVsCow
Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"
Language:R2 2 02
evotools/CattleOManalyses
Script and some results from the Optical mapping SV analyses
Language:Shell1 1 00
evotools/GCRF_tutorial
Material for the bioinformatics tutorial held in Tanzania in May 2022
Language:HTML0 1 00
evotools/hapbinX
Pairwise version of hapbin (https://github.com/evotools/hapbin) for studying the strength of selection on multi-allelic haplotypes
Language:C++0 3 01
evotools/mm-iHS
Scripts for calculating mm-iHS
Language:Perl00
evotools/nf-VarAnno
A cross-species variant annotation pipeline based on Nextflow
Language:Nextflow00