Pinned Repositories
ABlooper
Tool for modelling the CDRs of antibodies
asap_to_kite
CL python script to reformat CITEATAC fastqs for kite (kallisto | bustools) processing
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
bcr-repertoire-papers
Collection of papers related to BCR repertoire analyses
Cell_Reports_Rat_VTA_snRNA_2022
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
cellphonedb
ewowiredu's Repositories
ewowiredu/ABlooper
Tool for modelling the CDRs of antibodies
ewowiredu/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
ewowiredu/awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
ewowiredu/bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
ewowiredu/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
ewowiredu/celltypist
A tool for semi-automatic cell type classification, harmonization and integration
ewowiredu/CrossTalkeR
R package to do the Ligand Receptor Analysis Visualization
ewowiredu/dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
ewowiredu/enclone
VDJ Clonotyping & Analysis Tools
ewowiredu/EnrichIntersect
R package for custom set enrichment analysis (CSEA) and interactive visualization of intersecting sets
ewowiredu/ezSingleCell2
ewowiredu/GseaVis
An implement R package to visualize GSEA results
ewowiredu/immunarch
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
ewowiredu/liana
LIANA: a LIgand-receptor ANalysis frAmework
ewowiredu/MBC_Plasticity_Moor_Boyman_Collaboration
This is the code that was used to analyze the single cell sequencing data for the project "Fate and plasticity of SARS-CoV-2-specific B cells during memory and recall in humans"
ewowiredu/metacell
Metacell - Single-cell mRNA Analysis
ewowiredu/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
ewowiredu/multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
ewowiredu/nichenetr
NicheNet: predict active ligand-target links between interacting cells
ewowiredu/Phillips_2023_NAc
Code repository for Phillips 2023
ewowiredu/Platypus
R package for the analysis of single-cell immune repertoires
ewowiredu/sanbomics_scripts
scripts and notebooks from sanbomics
ewowiredu/scab
ewowiredu/scBERT
ewowiredu/scDblFinder
Methods for detecting doublets in single-cell sequencing data
ewowiredu/scGPT
ewowiredu/SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
ewowiredu/ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
ewowiredu/vdjtools
Post-analysis of immune repertoire sequencing data
ewowiredu/velocyto.R
RNA velocity estimation in R