Scripts developed when doing Intern @ NIH/NEI summer 2016 All codes runs at biowulf2.nih.gov
Get1000G: Scripts for decide which fastqfile to Download and generate cmds to download them.
ExomePipeline: Pipeline to call variants from Fastq file (Exome sequencing).
RNAPipeline: Pipeline to call variants from Fastq file (RNA sequencing).
VCF_FilterSelection: Scripts to filter variants according to certain criteria.
TABLE_FILTER: Filter Big ANNOVAR Variants table using Apache Spark.
EPACTS: Scripts running rare vairant association test in EPACTS
swarm: submit parallel jobs on slurm cluster. Copyright@NIH Biowulf Cluster
sjobs: user-friendly view jobs on slurm cluster. Copyright@NIH Biowulf Cluster