Pinned Repositories
example-workflow
find-defence-systems
Pipeline that detects defence systems in bacterial genome sequences.
minimal_example_snakemake_module
Repo to exemplify issue when importing Python modules within Snakemake modules
msc-intro-R
Workshop page for the introductory R workshop of the Maths Skills Centre, University of York.
ont-assembly-pipeline
Snakemake pipeline to assemble ONT reads
snakemake-github-action
A Github action for running a Snakemake workflow
snakemake-novice-bioinformatics
Introduction to Snakemake for Bioinformatics
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
ezherman's Repositories
ezherman/example-workflow
ezherman/find-defence-systems
Pipeline that detects defence systems in bacterial genome sequences.
ezherman/minimal_example_snakemake_module
Repo to exemplify issue when importing Python modules within Snakemake modules
ezherman/msc-intro-R
Workshop page for the introductory R workshop of the Maths Skills Centre, University of York.
ezherman/ont-assembly-pipeline
Snakemake pipeline to assemble ONT reads
ezherman/snakemake-github-action
A Github action for running a Snakemake workflow
ezherman/snakemake-novice-bioinformatics
Introduction to Snakemake for Bioinformatics