/subtomo

Legacy scripts for doing subtomogrphic analysis

Primary LanguagePythonMIT LicenseMIT

subtomo

Legacy scripts for doing subtomogrphic analysis

Running

docker run --rm docker.io/ezralanglois/subtomo -c "import EMAN2"

You need to mount the directory with the data in the docker container

  • $HOME/Downloads is the local directory that contains the HDF files

  • /opt/scripts/sta_extract_coords.py is the script that extracts coordinates from the HDF file

    docker run -v$HOME/Downloads:/data --rm docker.io/ezralanglois/subtomo /opt/scripts/sta_extract_coords.py /data/INS_HG_22_g1_t3_noglucose_bound.hdf /data/INS_HG_22_g1_t3_noglucose_bound.csv