fafuyyk

Pinned Repositories

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Language:Jupyter Notebook00
Angiosperm-karyotype-evolution
Angiosperm karyotype evolution
Language:Pep800
Aristolochia_fimbriata_genome_analysis
Aristolochia fimbriata genome analysis
Language:Python00
ASTER
Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)
Language:C++00
astral
Organize Your GitHub Stars With Ease
Language:PHP00
Awesome-Bioinformatics-CN
生物信息学软件，资源和工具库的精选列表
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bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
Language:C00
Bowtie2-Manual-CN
Bowtie2's manual in Chinese - Bowtie2中文使用手册
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cattleGTEx
The cattle Genotype-Tissue Expression atlas v1
Language:Shell00
EasySpeciesTree
Easily construct the ML species tree with single-copy gene shared by different species.
Language:Python00

fafuyyk's Repositories

fafuyyk/-
Language:Jupyter Notebook00
fafuyyk/Angiosperm-karyotype-evolution
Angiosperm karyotype evolution
Language:Pep800
fafuyyk/Aristolochia_fimbriata_genome_analysis
Aristolochia fimbriata genome analysis
Language:Python00
fafuyyk/ASTER
Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)
Language:C++00
fafuyyk/astral
Organize Your GitHub Stars With Ease
Language:PHP00
fafuyyk/Awesome-Bioinformatics-CN
生物信息学软件，资源和工具库的精选列表
00
fafuyyk/bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
Language:C00
fafuyyk/cattleGTEx
The cattle Genotype-Tissue Expression atlas v1
Language:Shell00
fafuyyk/EasySpeciesTree
Easily construct the ML species tree with single-copy gene shared by different species.
Language:Python00
fafuyyk/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
fafuyyk/FileSaver.js
An HTML5 saveAs() FileSaver implementation
fafuyyk/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
fafuyyk/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
fafuyyk/how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
fafuyyk/IntronGetting
Python scripts that getting ortholog EPIC sequences for phylogenomic analysis.
fafuyyk/jbrowse-components
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
fafuyyk/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
fafuyyk/Juicebox
Visualization and analysis software for Hi-C data -
fafuyyk/kakscalculator2
Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
fafuyyk/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
fafuyyk/Matplotlib-Plotting
fafuyyk/MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
fafuyyk/OrthoFinder
Phylogenetic orthology inference for comparative genomics
fafuyyk/partitionfinder
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
fafuyyk/PolyCRACKER-Unofficial-Mirror
A robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5
fafuyyk/Repeatable-module-collection
I am a newbie to python, I use this repository to save some of the more commonly used codes
fafuyyk/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
fafuyyk/SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
fafuyyk/synvisio
SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.
Language:JavaScript
fafuyyk/tensorqtl
Ultrafast GPU-enabled QTL mapper