Pinned Repositories
bird-db
the application and database underlying birds.faircloth-lab.org
conda-recipes
bioinformatics program recipes for the conda package manager
edittag
edit distance sequence tags and helpers
illumiprocessor
pre-process illumina reads
phyluce
software for UCE (and general) phylogenomics
protocols
Our laboratory repository
seqtools
Tools for sequence and alignment manipulation
splitaake
demultiplex massively parallel sequencing data
tapir
Tally Approximations of Phylogenetic Informativeness Rapidly (TAPIR)
uce-probe-sets
Repository of different outgroup databases for use building UCE trees
faircloth-lab's Repositories
faircloth-lab/phyluce
software for UCE (and general) phylogenomics
faircloth-lab/illumiprocessor
pre-process illumina reads
faircloth-lab/edittag
edit distance sequence tags and helpers
faircloth-lab/protocols
Our laboratory repository
faircloth-lab/splitaake
demultiplex massively parallel sequencing data
faircloth-lab/tapir
Tally Approximations of Phylogenetic Informativeness Rapidly (TAPIR)
faircloth-lab/conda-recipes
bioinformatics program recipes for the conda package manager
faircloth-lab/itero
A strongly opinionated, iterative, guided contig assembly pipeline. Integrates (+error-correction), bwa-mem, bedtools, and samtools. MPI and multiprocessing aware.
faircloth-lab/uce-probe-design
Code for designing UCE probes
faircloth-lab/cookiecutter-supermike-examl
faircloth-lab/msatcommander-gs
A grown-up version of msatcommander for genome-scale data
faircloth-lab/radcap
Software for processing data from RADcap
faircloth-lab/alfred_zotquery
An Alfred workflow to interact with a user's Zotero data.
faircloth-lab/bioconda-recipes
Conda recipes for the bioconda channel.
faircloth-lab/cactus
Official home of genome aligner based upon notion of Cactus graphs
faircloth-lab/cactus-prepare-parser
A quick python script to generate SLURM submission scripts from `cactus-prepare` stdout
faircloth-lab/chopsuey
Virtual digests of DNA
faircloth-lab/cookiecutter-supermike-exabayes
faircloth-lab/cyverse
Various Docker Files For CyVerse Discovery Environment
faircloth-lab/dockerfiles
Docker files that we use
faircloth-lab/exa-helpers
faircloth-lab/index-counters
Variety of Code for Counting Illumina Index Sequences
faircloth-lab/meta
faircloth-lab/phyluce-workflows
Snakemake workflows for phyluce tasks
faircloth-lab/private-alleles
Compute private alleles in one population relative to another
faircloth-lab/rhino
faircloth-lab/sate-core
faircloth-lab/sh_t
parallel, automated SH-testing
faircloth-lab/singularity
Singularity Container Definition Files
faircloth-lab/threerad
3RAD data processing