falsetry1514

Pinned Repositories

• topact-paper

  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"

  Language:Jupyter Notebook10141

• openst

  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

  Language:HTML9483214

• spacemake

  Language:Python4166912

• snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:Python2.4k181.9k589

• BIDCell

  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data

  Language:Python428277

• UCS

  Code for "UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics"

  Language:Jupyter Notebook6141

falsetry1514's Repositories