fanghuan95

fanghuan95's Stars

• etal/cnvkit

  Copy number variant detection from targeted DNA sequencing

  Language:Python560166

• RabbitBio/RabbitQCPlus

  A more efficient quality control tool for sequencing data

  Language:C++222

• OpenGene/GeneFuse

  Gene fusion detection and visualization

  Language:C11663

• FNL-MoCha/nextgenseq_pipeline

  Exome/Capture/RNASeq Pipeline Implementation using snakemake

  Language:Python187

• lima1/PureCN

  Copy number calling and variant classification using targeted short read sequencing

  Language:R12832

• VanLoo-lab/ascat

  ASCAT R package

  Language:HTML17285

• cran/sequenza

  :exclamation: This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homepage: https://sequenzatools.bitbucket.io, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group Report bugs for this package: https://bitbucket.org/sequenzatools/sequenza/issues

  Language:R185

• alimanfoo/pysamstats

  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

  Language:Python19243

• sztup/scarHRD

  Language:HTML10552

• mskcc/facets

  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

  Language:R14467

• biocommons/hgvs

  Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

  Language:Python24694

• broadinstitute/PhylogicNDT

  Language:HTML7139

• genepattern/ABSOLUTE

  Contains gp-unit tests for ABSOLUTE modules

  Language:R7

• OpenGene/gencore

  Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

  Language:C++11631

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k334

• GenePlus/ncsv

  NoahCare Structural Variant Calling

  Language:C2