fanglab

Pinned Repositories

6mASCOPE
Language:Python8 6 10
BEAST
Bacterial Epigenomics Analysis SuiTe
Language:R9 5 12
MatrixEpistasis
Ultrafast exhaustive epistasis scan for quantitative traits with covariate adjustment
Language:R5 5 24
mbin
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
Language:Python25 3 153
MeMoRe
Tool for validation of methylation motifs detected with SMRT sequencing
Language:R20
nanodisco
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
Language:R66 7 797
SMALR
SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.
Language:Python8 3 156
SMRTER
Single Molecule Real Time sequencing Epigenetic Refinement
Language:R62

fanglab's Repositories

fanglab/nanodisco
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
Language:R66 7 797
fanglab/mbin
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
Language:Python25 3 153
fanglab/BEAST
Bacterial Epigenomics Analysis SuiTe
Language:R9 5 12
fanglab/6mASCOPE
Language:Python8 6 10
fanglab/SMALR
SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.
Language:Python8 3 156
fanglab/SMRTER
Single Molecule Real Time sequencing Epigenetic Refinement
Language:R62
fanglab/MatrixEpistasis
Ultrafast exhaustive epistasis scan for quantitative traits with covariate adjustment
Language:R5 5 24
fanglab/MeMoRe
Tool for validation of methylation motifs detected with SMRT sequencing
Language:R20