Pinned Repositories
algebra
A tool for algebraic manipulation.
ALTRE
ALTered Regulatory Elements
ATAC-seq
atac-seq-pipeline
ENCODE ATAC-seq pipeline
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
ChIPseq_alignment
GWAS_2017
PBSB 5021 Quantitative Genomics and Genetics
Hackathon_2020
2020 IBM coronavirus challenge at Cornell
machine_learning_python
Zleep
fanying2015's Repositories
fanying2015/algebra
A tool for algebraic manipulation.
fanying2015/atac-seq-pipeline
ENCODE ATAC-seq pipeline
fanying2015/ChIPseq_alignment
fanying2015/Hackathon_2020
2020 IBM coronavirus challenge at Cornell
fanying2015/Zleep
fanying2015/BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
fanying2015/biotools
A list of useful bioinformatics resources
fanying2015/cbioportal
cBioPortal for Cancer Genomics
fanying2015/ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
fanying2015/chip-seq-pipeline2
fanying2015/CPI1000_paper
fanying2015/deeplearning-biology
A list of deep learning implementations in biology
fanying2015/exe
example of collaboration in git
fanying2015/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics
fanying2015/gitclass
test project for git
fanying2015/GSSG
Gene Set + S2G strategy annotations analyzed for disease architecture
fanying2015/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
fanying2015/main
Summary of training offered by the Harvard Chan Bioinformatics Core
fanying2015/models
Model zoo for genomics
fanying2015/NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
fanying2015/pyDNase
Python module for the easy handling and analysis of DNase-seq data
fanying2015/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
fanying2015/python_advanced
preparation for Dec 2015 advanced python workshop
fanying2015/reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
fanying2015/repo_test3
for workshop_3_collaborating
fanying2015/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
fanying2015/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
fanying2015/Teng_project
fanying2015/unit-testing-seminar
Unit Testing for Reproducible Science seminar at Sloan Kettering
fanying2015/WCDT
WGS Analysis for Quigley et al. 2018