This repo describes the basic pipeline of bulk RNA-seq analysis from using Snakemake, Kallisto for read mapping, gene quantification, QC, PCA, and downstream analysis.
fanzhanglab/bulk_RNAseq_pipeline
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
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