Pinned Repositories
CleanedCode
Fan's code in Grigoryan lab
CliXO-1.0
CliXO algorithm re-implemented
ddot
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
decoupleR
R package to infer biological activities from omics data using a collection of methods.
decoupleR_manuscript
Code to reproduce the results from decoupleR's manuscript
decoupleRBench
Package to benchmark methods from decoupleR
HiDeF
HiDeF (Hierarchical community Decoding Framework)
HiDeF0
HiDeF (Hierarchical community Decoding Framework)
HiSig
Enrichment analysis for nested and overlapping gene sets
TERM-ddG
method for computing stability changes in proteins upon mutations, published in https://doi.org/10.1371/journal.pone.0178272
fanzheng10's Repositories
fanzheng10/CliXO-1.0
CliXO algorithm re-implemented
fanzheng10/HiDeF
HiDeF (Hierarchical community Decoding Framework)
fanzheng10/HiSig
Enrichment analysis for nested and overlapping gene sets
fanzheng10/HiDeF0
HiDeF (Hierarchical community Decoding Framework)
fanzheng10/CleanedCode
Fan's code in Grigoryan lab
fanzheng10/ddot
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
fanzheng10/decoupleR
R package to infer biological activities from omics data using a collection of methods.
fanzheng10/decoupleR_manuscript
Code to reproduce the results from decoupleR's manuscript
fanzheng10/decoupleRBench
Package to benchmark methods from decoupleR
fanzheng10/TERM-ddG
method for computing stability changes in proteins upon mutations, published in https://doi.org/10.1371/journal.pone.0178272
fanzheng10/DeepPhos
fanzheng10/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
fanzheng10/More-cancer-mutation-analysis
Analysis of mutations in new cohorts after TCGA, such as ICGC, CPTAC and GENIE, using the tools developed in the NeST paper
fanzheng10/Trips-Viz
A transcriptome browser for Ribo-Seq and RNA-Seq data