Pinned Repositories
DeepLabCut-Analysis-Jupyter-Scripts
While DLCAnalyzer and DLC Helper functions are great. They fail to accommodate a vast range of behavior investigator's needs. The Jupyter script provided here is meant for post processing/analyzing DeepLabCut (DLC) CSV files. The script allows user to filter data, calculate velocities, draw Region of Interest (ROI), and more.
BehaviorAnalysis_YOLOv8
ConvertFrames2OneHotFormat
I extract frames from a video using FFmpeg and identify interesting behaviors frame by frame. I then use a Jupyter script to parse out the frame numbers and create an annotation file, a CSV file, which can then be imported into our A-SOID project.
Dynamic_Position_Velocity_Visualizer_For_DLC
I created this notebook to help me with behavioral neuroscience experiments. It calculates the average positions and velocities of two body parts (for better accuracy), and creates visualizations such as GIFs and streamline plots to represent the motion and flow of movement.
Multi-ROI-Analysis-with-DeepLabCut-CSV-Outputs
BehaviorDEPOT_Visualizations
This Repo contains Matlab scripts to aid in visualizing data ouput from BehaviorDEPOT.
Bonsai_DLC_BehaviorAnalysis
NovelObject_Interaction_YOLOv8
YOLOv8_Multi-Animal_Behavior_Analysis_Demo
YOLOv8_Open-Field-Analysis
YOLOv8_CustomModel_Open-Field-Analysis
farhanaugustine's Repositories
farhanaugustine/YOLOv8_Multi-Animal_Behavior_Analysis_Demo
farhanaugustine/BehaviorDEPOT_Visualizations
This Repo contains Matlab scripts to aid in visualizing data ouput from BehaviorDEPOT.
farhanaugustine/NovelObject_Interaction_YOLOv8
farhanaugustine/ConvertFrames2OneHotFormat
I extract frames from a video using FFmpeg and identify interesting behaviors frame by frame. I then use a Jupyter script to parse out the frame numbers and create an annotation file, a CSV file, which can then be imported into our A-SOID project.
farhanaugustine/Bonsai_DLC_BehaviorAnalysis
farhanaugustine/BehaviorAnalysis_YOLOv8
farhanaugustine/Multi-ROI-Analysis-with-DeepLabCut-CSV-Outputs
farhanaugustine/YOLOv8_Open-Field-Analysis
YOLOv8_CustomModel_Open-Field-Analysis
farhanaugustine/DeepLabCut-Analysis-Jupyter-Scripts
While DLCAnalyzer and DLC Helper functions are great. They fail to accommodate a vast range of behavior investigator's needs. The Jupyter script provided here is meant for post processing/analyzing DeepLabCut (DLC) CSV files. The script allows user to filter data, calculate velocities, draw Region of Interest (ROI), and more.
farhanaugustine/Dynamic_Position_Velocity_Visualizer_For_DLC
I created this notebook to help me with behavioral neuroscience experiments. It calculates the average positions and velocities of two body parts (for better accuracy), and creates visualizations such as GIFs and streamline plots to represent the motion and flow of movement.